Basic Information
Locus ID:
nbisL1-mrna-8470
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001135F_pilon | 1097521 | 1102199 | + | nbisL1-mrna-8470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.60 | 38,880.22 Da | 37.89 | 86.28 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26950.1 | 0 | |
| RefSeq | XP_002298648.4 | - | 0 |
| TrEMBL | A0A2P2IWC4 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40495 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25015 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026896 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g131000 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13659, Sbi_jg52242 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9604 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017630 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33448, Sgl38815 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000201, gene:ENSEOMG00000004012 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0020440, CQ.Regalona.r1.6BG0021520 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30025130 |
| Apiaceae | Apium graveolens | 2 | Ag10G01107, Ag6G01501 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G005340 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708101 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.1426.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G07882 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G26950.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003939m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g16080.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g067150.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0077 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0083 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g09630 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g12780, gene.Thate06g08920 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2316 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.100 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G22711, Lb7G35080 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.1362, BH04.1363, CH04.1543 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9BG0708020 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0731490.1 |
| Poaceae | Oryza coarctata | 2 | Oco21G006080, Oco22G007140 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g31110.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G148600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0703778, Pt_Chr0703783 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G017350, Chr31G005460 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G750100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7BG055110 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G445400.1, TraesCS7B02G344900.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-50258 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18869 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2681, evm.TU.LG08.307 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g16960 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.808 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14481 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3672 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12411 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000061l.73 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009100 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-881 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8470 |
| Salicaceae | Populus euphratica | 1 | populus_peu01281 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622612 |
| Solanaceae | Solanum chilense | 1 | SOLCI004270400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009210 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13592 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3434 |
| Zosteraceae | Zostera marina | 1 | Zosma05g01420.v3.1 |