Basic Information
Locus ID:
nbisL1-mrna-8458
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Agamous-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000059F_pilon | 4090322 | 4094997 | - | nbisL1-mrna-8458 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.31 | 24,044.49 Da | 55.30 | 78.85 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 2 | 71 | 4.57525E-43 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 2.0E-27 | IPR002100 |
| Pfam | PF01486 | K-box region | 85 | 152 | 2.5E-14 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 72 | 9.29E-33 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 93 | 1.0E-29 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 2.1E-41 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 32.295677 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 87 | 178 | 10.010275 | IPR002487 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 3.0E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 3.0E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 3.0E-31 | IPR002100 |
| Coils | Coil | Coil | 117 | 141 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.1 | AGAMOUS-like 19. MADS-box protein AGL19 | 0 |
| RefSeq | XP_034894887.1 | agamous-like MADS-box protein AGL19 isoform X2 [Populus alba] | 0 |
| O82743 | Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2ZX04 | MADS box transcription factor OS=Populus deltoides OX=3696 GN=H0E87_002764 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology