Basic Information
Locus ID:
nbisL1-mrna-8456
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Fizzy-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000059F_pilon | 4080170 | 4084239 | + | nbisL1-mrna-8456 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 52,640.68 Da | 51.71 | 75.61 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 294 | 326 | 7.8E-5 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 213 | 267 | 5.7E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 420 | 456 | 1.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 331 | 371 | 0.013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 169 | 463 | 3.85E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 152 | 461 | 2.3E-121 | IPR015943 |
| SMART | SM00320 | WD40_4 | 203 | 243 | 0.0058 | IPR001680 |
| SMART | SM00320 | WD40_4 | 159 | 200 | 50.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 287 | 326 | 2.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 246 | 283 | 0.23 | IPR001680 |
| SMART | SM00320 | WD40_4 | 373 | 414 | 480.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 329 | 371 | 0.0034 | IPR001680 |
| SMART | SM00320 | WD40_4 | 417 | 456 | 3.9E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 211 | 252 | 10.040596 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 294 | 326 | 10.311051 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 294 | 335 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 424 | 457 | 11.761044 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 424 | 457 | 14.217871 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 443 | 457 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22910.1 | FIZZY-related 2. | 0 |
| RefSeq | XP_021686258.1 | protein FIZZY-RELATED 2-like [Hevea brasiliensis] | 0 |
| Q9M7I2 | B-type cell cycle switch protein ccs52A OS=Medicago truncatula OX=3880 GN=CCS52A PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JF06 | Uncharacterized protein MANES_01G069800 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology