Basic Information
Locus ID:
nbisL1-mrna-8450
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 15359870 | 15366899 | - | nbisL1-mrna-8450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 109,698.40 Da | 48.03 | 75.41 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02021 | GntK | 818 | 966 | 1.54181E-53 | IPR006001 |
| Pfam | PF01202 | Shikimate kinase | 824 | 942 | 6.1E-15 | IPR031322 |
| Pfam | PF00855 | PWWP domain | 16 | 92 | 1.7E-8 | IPR000313 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 814 | 987 | 9.52E-24 | IPR027417 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 15 | 95 | 1.56E-8 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 809 | 988 | 2.1E-56 | IPR027417 |
| Gene3D | G3DSA:2.30.30.140 | - | 4 | 127 | 4.5E-9 | - |
| TIGRFAM | TIGR01313 | therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family | 818 | 987 | 5.1E-46 | IPR006001 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 16 | 71 | 10.432139 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 379 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 670 | 701 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 154 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03140.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_021684298.1 | uncharacterized protein At1g51745-like [Hevea brasiliensis] | 0 |
| Q9SLE0 | Gluconokinase OS=Arabidopsis thaliana OX=3702 GN=At2g16790 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2KCB6 | PWWP domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2069 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3431 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018387 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g050070 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14868, Sbi_jg55644 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26199 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017943 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01109, Sgl06194 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002781, gene:ENSEOMG00000029997 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0007170, CQ.Regalona.r1.3BG0007180 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30100260, pistato.v30291820 |
| Apiaceae | Apium graveolens | 2 | Ag2G02154, Ag3G02053 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G015290, COCNU_10G009480, COCNU_10G009490 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103703817, gene-LOC103714526, gene-LOC120109527 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.927.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G00883 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G03140.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020126m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02180.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g061690.2N, BniB07g060800.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1936 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2117 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno15g00850, gene.Cymno18g05270 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g22260, gene.Thate09g04280, gene.Thate09g04290 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-8028, nbisL1-mrna-8029 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1788 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00012873, Pov_00032480, Pov_00032481, Pov_00041264 ... |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G02579, Lb5G26875 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3114, BH07.2938, CH07.3016 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2BG0197620 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0194200.1, HORVU.MOREX.r3.6HG0606490.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_024595, gene-QYE76_046106 |
| Poaceae | Oryza coarctata | 4 | Oco03G019020, Oco04G019780, Oco07G014850, Oco08G014340 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g47170.1, LOC_Os04g51060.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G244300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0203880, Pt_Chr0301464, Pt_Chr0301503 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G004430, Chr09G022650, Chr15G005840 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G747500, Tel6E01G494800 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG063490, gene_TRIDC2BG067530 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G442800.1, TraesCS2B02G463900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb188160_P001, Zm00001eb251630_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-9029 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14202 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.647, evm.TU.LG04.125 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g01570 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.592, evm.TU.Scaffold_2_RagTag.1683 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3514, nbisL1-mrna-7581 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-4940, nbisL1-mrna-5660 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13989, nbisL1-mrna-5601 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.291 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005430, Maker00011474 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2724, nbisL1-mrna-8450 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16744, nbisL1-mrna-699 |
| Salicaceae | Populus euphratica | 2 | populus_peu16213, populus_peu19327 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132602793, gene-LOC132632228 |
| Solanaceae | Solanum chilense | 2 | SOLCI000095200, SOLCI001335200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014780, gene-LOC107021107 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_3935, gene_9913 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G2787, TC08G1073 |
| Zosteraceae | Zostera marina | 2 | Zosma02g02510.v3.1, Zosma06g02290.v3.1 |