Basic Information
Locus ID:
nbisL1-mrna-8443
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Plastocyanin-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000059F_pilon | 4024731 | 4025552 | + | nbisL1-mrna-8443 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 17,605.22 Da | 29.51 | 93.15 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04216 | Phytocyanin | 23 | 121 | 1.22045E-40 | - |
| Pfam | PF02298 | Plastocyanin-like domain | 33 | 113 | 2.4E-24 | IPR003245 |
| SUPERFAMILY | SSF49503 | Cupredoxins | 22 | 122 | 1.22E-31 | IPR008972 |
| Gene3D | G3DSA:2.60.40.420 | - | 21 | 126 | 5.4E-33 | IPR008972 |
| ProSiteProfiles | PS51485 | Phytocyanin domain profile. | 23 | 123 | 34.397125 | IPR003245 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17675.1 | Cupredoxin superfamily protein. Encodes a Plantacyanin/Basic blue family protein | 0 |
| RefSeq | XP_008373881.1 | stellacyanin-like [Malus domestica] | 0 |
| A0A072U307 | Blue copper protein 1b OS=Medicago truncatula OX=3880 GN=BCP1B PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6R3H9 | Phytocyanin domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_012049 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology