Basic Information
Locus ID:
nbisL1-mrna-8434
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001135F_pilon | 866296 | 867630 | - | nbisL1-mrna-8434 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 49,321.38 Da | 33.37 | 101.89 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 33 | 75 | 4.94034E-24 | - |
| Pfam | PF04564 | U-box domain | 29 | 100 | 2.8E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 149 | 422 | 5.76E-17 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 21 | 103 | 1.94E-30 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 8 | 106 | 1.3E-28 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 123 | 422 | 8.4E-18 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 32 | 95 | 1.1E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 28 | 102 | 41.585403 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_021660674.1 | U-box domain-containing protein 21-like [Hevea brasiliensis] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A6M632 | RING-type E3 ubiquitin transferase OS=Hevea brasiliensis OX=3981 GN=GH714_000804 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology