HalophFGD

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Basic Information
Locus ID: nbisL1-mrna-8412
Species & Taxonomic ID: Rhizophora apiculata & 106626
Genome Assembly: GCA_037832385.1
Short Name: GLT1
Description: glutamate synthase
Maps and Mapping Data
Chromosome Start End Strand ID
chr1 15677803 15689024 - nbisL1-mrna-8412
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.23 244,198.20 Da 38.07 84.27 -0.28
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd02808 GltS_FMN 956 1337 1.72355E-166 IPR002932
CDD cd00982 gltB_C 1383 1632 1.79038E-150 IPR002489
CDD cd00713 GltS 124 546 0.0 -
Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 1852 2178 5.9E-26 IPR023753
Pfam PF01493 GXGXG motif 1406 1592 5.2E-85 IPR002489
Pfam PF01645 Conserved region in glutamate synthase 954 1322 3.9E-152 IPR002932
Pfam PF04898 Glutamate synthase central domain 599 887 1.5E-111 IPR006982
Pfam PF00310 Glutamine amidotransferases class-II 124 551 1.1E-183 IPR017932
Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 1728 1839 2.1E-21 IPR028261
SUPERFAMILY SSF46548 alpha-helical ferredoxin 1705 1862 3.24E-37 -
SUPERFAMILY SSF51395 FMN-linked oxidoreductases 595 1357 7.33E-252 -
SUPERFAMILY SSF56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases) 124 554 1.31E-150 IPR029055
SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 1849 2189 2.72E-61 IPR036188
SUPERFAMILY SSF69336 Alpha subunit of glutamate synthase, C-terminal domain 1374 1639 1.96E-98 IPR036485
Gene3D G3DSA:3.20.20.70 Aldolase class I 939 1378 1.2E-202 IPR013785
Gene3D G3DSA:2.160.20.60 - 1379 1650 8.0E-111 IPR036485
Gene3D G3DSA:3.20.20.70 Aldolase class I 580 938 4.9E-133 IPR013785
Gene3D G3DSA:3.60.20.10 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 124 563 1.6E-197 IPR029055
Gene3D G3DSA:3.40.50.720 - 1852 1960 8.1E-16 -
Gene3D G3DSA:3.50.50.60 - 1961 2122 1.1E-32 IPR036188
Gene3D G3DSA:1.10.1060.10 - 1685 1851 5.1E-42 IPR009051
TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 1707 2192 7.9E-227 IPR006005
PIRSF PIRSF000187 GOGAT 40 2218 0.0 IPR012220
ProSiteProfiles PS51278 Glutamine amidotransferase type 2 domain profile. 124 528 23.534285 IPR017932
PRINTS PR00419 Adrenodoxin reductase family signature 1919 1929 6.7E-23 -
PRINTS PR00419 Adrenodoxin reductase family signature 1853 1875 6.7E-23 -
PRINTS PR00419 Adrenodoxin reductase family signature 1997 2011 6.7E-23 -
PRINTS PR00419 Adrenodoxin reductase family signature 1876 1889 6.7E-23 -
MobiDBLite mobidb-lite consensus disorder prediction 2212 2226 - -
MobiDBLite mobidb-lite consensus disorder prediction 2199 2226 - -
Coils Coil Coil 1642 1674 - -
Gene Ontology
Biological Process:
GO:0006537 (glutamate biosynthetic process) GO:0008152 (metabolic process)
Molecular Function:
GO:0003824 (catalytic activity) GO:0005506 (iron ion binding) GO:0010181 (FMN binding) GO:0015930 (glutamate synthase activity) GO:0016040 (glutamate synthase (NADH) activity) GO:0016491 (oxidoreductase activity) GO:0016638 (oxidoreductase activity, acting on the CH-NH2 group of donors) GO:0016639 (oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor) GO:0050660 (flavin adenine dinucleotide binding) GO:0051536 (iron-sulfur cluster binding)
KEGG Pathway
KO Term:
K00264 (glutamate synthase (NADH) [EC:1.4.1.14])
Pathway:
ko00250 (Alanine, aspartate and glutamate metabolism) map00250 (Alanine, aspartate and glutamate metabolism) ko00910 (Nitrogen metabolism) map00910 (Nitrogen metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids)
Reaction:
R00093 (2 L-Glutamate + NAD+ <=> L-Glutamine + 2-Oxoglutarate + NADH + H+) R00114 (2 L-Glutamate + NADP+ <=> L-Glutamine + 2-Oxoglutarate + NADPH + H+) R00248 (L-Glutamate + NADP+ + H2O <=> 2-Oxoglutarate + Ammonia + NADPH + H+)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G53460.1 NADH-dependent glutamate synthase 1. NADH-dependent glutamate synthase 0
RefSeq XP_021682260.1 glutamate synthase 1 [NADH], chloroplastic isoform X1 [Hevea brasiliensis] 0
Swiss-Prot Q9LV03 Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GLT1 PE=1 SV=2 0
TrEMBL B9RII5 glutamate synthase (NADH) OS=Ricinus communis OX=3988 GN=RCOM_1579610 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg13893, jg2196
Aizoaceae Mesembryanthemum crystallinum 1 gene_3295
Amaranthaceae Atriplex hortensis 1 Ah018647
Amaranthaceae Beta vulgaris 1 BVRB_3g052140
Amaranthaceae Salicornia bigelovii 2 Sbi_jg15107, Sbi_jg55939
Amaranthaceae Salicornia europaea 1 Seu_jg26420
Amaranthaceae Suaeda aralocaspica 1 GOSA_00020044
Amaranthaceae Suaeda glauca 5 Sgl01374, Sgl01440, Sgl01441, Sgl06449, Sgl06528
Amaranthaceae Chenopodium album 3 gene:ENSEOMG00000000510, gene:ENSEOMG00000031859 ...
gene:ENSEOMG00000043885
Amaranthaceae Chenopodium quinoa 2 CQ.Regalona.r1.3AG0004880, CQ.Regalona.r1.3BG0004920
Anacardiaceae Pistacia vera 1 pistato.v30185180
Apiaceae Apium graveolens 2 Ag10G02525, AgUnG00467
Arecaceae Cocos nucifera 2 COCNU_03G013130, scaffold000561G000020
Arecaceae Phoenix dactylifera 2 gene-LOC103708325, gene-LOC103713334
Asparagaceae Asparagus officinalis 1 AsparagusV1_05.2833.V1.1
Asteraceae Flaveria trinervia 1 Ftri18G12439
Brassicaceae Arabidopsis thaliana 1 AT5G53460.1
Brassicaceae Eutrema salsugineum 1 Thhalv10012414m.g.v1.0
Brassicaceae Schrenkiella parvula 1 Sp6g15593.v2.2
Brassicaceae Brassica nigra 1 BniB08g016600.2N
Casuarinaceae Casuarina equisetifolia 1 Ceq09G1606
Casuarinaceae Casuarina glauca 1 Cgl09G1742
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno02g12650, gene.Cymno12g01560
Dunaliellaceae Dunaliella salina 1 Dusal.0052s00003.v1.0
Hydrocharitaceae Thalassia testudinum 2 gene.Thate03g24920, gene.Thate09g14990
Nitrariaceae Nitraria sibirica 1 evm.TU.LG01.2897
Plantaginaceae Plantago ovata 1 Pov_00041146
Plumbaginaceae Limonium bicolor 2 Lb0G37740, Lb7G32942
Poaceae Echinochloa crus-galli 5 AH02.2769, AH05.1457, BH02.2852, BH05.1626, CH02.3687
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_1AG0028780, gene-QOZ80_1BG0079010 ...
gene-QOZ80_5AG0363860, gene-QOZ80_5BG0411960
Poaceae Hordeum vulgare 1 HORVU.MOREX.r3.3HG0280530.1
Poaceae Lolium multiflorum 2 gene-QYE76_054594, gene-QYE76_054602
Poaceae Oryza coarctata 4 Oco01G017400, Oco02G017650, Oco09G016320, Oco10G016130
Poaceae Oryza sativa 2 LOC_Os01g48960.1, LOC_Os05g48200.1
Poaceae Paspalum vaginatum 3 gene-BS78_03G233100, gene-BS78_03G236800 ...
gene-BS78_09G229900
Poaceae Puccinellia tenuiflora 1 Pt_Chr0602367
Poaceae Sporobolus alterniflorus 3 Chr02G012560, Chr03G013590, Chr08G013750
Poaceae Thinopyrum elongatum 1 Tel3E01G442300
Poaceae Triticum dicoccoides 2 gene_TRIDC3AG039670, gene_TRIDC3BG044820
Poaceae Triticum aestivum 3 TraesCS3A02G266300.1, TraesCS3B02G299800.1 ...
TraesCS3D02G266400.1
Poaceae Zea mays 3 Zm00001eb156610_P002, Zm00001eb295220_P001 ...
Zm00001eb360480_P005
Poaceae Zoysia japonica 2 nbis-gene-12580, nbis-gene-26118
Poaceae Zoysia macrostachya 2 Zma_g10886, Zma_g8437
Portulacaceae Portulaca oleracea 1 evm.TU.LG06.1967
Posidoniaceae Posidonia oceanica 2 gene.Posoc08g13790, gene.Posoc09g09130
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_1_RagTag.622, evm.TU.Scaffold_2_RagTag.1648
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-3559, nbisL1-mrna-7507
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-2555, nbisL1-mrna-921
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-14013, nbisL1-mrna-5641
Rhizophoraceae Kandelia candel 2 evm.TU.utg000009l.314, evm.TU.utg000012l.386
Rhizophoraceae Kandelia obovata 2 Maker00005974, Maker00011451
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-2744, nbisL1-mrna-8412
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-16769, nbisL1-mrna-743
Salicaceae Populus euphratica 3 populus_peu28067, populus_peu29502, populus_peu29503
Solanaceae Lycium barbarum 1 gene-LOC132632063
Solanaceae Solanum pennellii 1 gene-LOC107013700
Tamaricaceae Reaumuria soongarica 1 gene_5260
Tamaricaceae Tamarix chinensis 1 TC06G1506
Zosteraceae Zostera marina 2 Zosma01g06270.v3.1, Zosma01g22390.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.