Basic Information
Locus ID:
nbisL1-mrna-8410
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Short Name:
RHC1A
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 53634325 | 53636243 | - | nbisL1-mrna-8410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 33,810.23 Da | 64.48 | 52.13 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 182 | 224 | 5.73135E-26 | - |
| Pfam | PF13639 | Ring finger domain | 182 | 224 | 1.9E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 6 | 37 | 9.4E-9 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 163 | 230 | 5.52E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 145 | 230 | 5.0E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 183 | 223 | 1.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 183 | 224 | 12.386007 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 292 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_039000444.1 | probable E3 ubiquitin-protein ligase RHC1A [Hibiscus syriacus] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A3AMB4 | RING-type E3 ubiquitin transferase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110457pilonHSYRG00027 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology