Basic Information
Locus ID:
nbisL1-mrna-8409
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Short Name:
RHC1A
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 53627725 | 53629514 | - | nbisL1-mrna-8409 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.65 | 32,511.81 Da | 59.59 | 53.44 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 182 | 224 | 2.16244E-24 | - |
| Pfam | PF13639 | Ring finger domain | 182 | 224 | 8.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 163 | 230 | 1.41E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 146 | 230 | 1.1E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 183 | 223 | 7.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 183 | 224 | 12.459772 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 294 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_039000449.1 | probable E3 ubiquitin-protein ligase RHC1A [Hibiscus syriacus] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A3AJX2 | RING-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110457pilonHSYRG00035 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology