halophFGD

Basic Information

Locus ID: nbisL1-mrna-840

Species & Taxonomic ID: Carallia pectinifolia & 98586

Genome Assembly: GCA_037832335.1

Description: F-box protein At5g46170-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr01	7931850	7932327	-	nbisL1-mrna-840

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.68	14,074.74 Da	49.35	91.32	-0.01

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID

Best hit

Source	Best Hit ID	Description
TAIR	AT5G46170.1	F-box family protein.
RefSeq	XP_006279647.1	F-box protein At5g46170 [Capsella rubella]
Swiss-Prot	Q9FNK5	F-box protein At5g46170 OS=Arabidopsis thaliana OX=3702 GN=At5g46170 PE=2 SV=1
TrEMBL	R0GJS8	-

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg20775, jg22282, jg25021, jg38760
Aizoaceae	Mesembryanthemum crystallinum	1	gene_606
Amaranthaceae	Atriplex hortensis	1	Ah016312
Amaranthaceae	Beta vulgaris	1	BVRB_8g188050
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg40583, Sbi_jg50612
Amaranthaceae	Salicornia europaea	1	Seu_jg2169
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00029116
Amaranthaceae	Suaeda glauca	3	Sgl45105, Sgl49877, Sgl49923
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000009224, gene:ENSEOMG00000032584 ... gene:ENSEOMG00000044374
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.8AG0009740, CQ.Regalona.r1.8BG0010770
Anacardiaceae	Pistacia vera	2	pistato.v30051090, pistato.v30057670
Apiaceae	Apium graveolens	2	Ag11G04926, Ag8G00767
Arecaceae	Cocos nucifera	5	COCNU_01G016070, COCNU_06G020410, COCNU_12G005370 ... COCNU_14G008700, scaffold005887G000020
Arecaceae	Phoenix dactylifera	7	gene-LOC103697030, gene-LOC103703693, gene-LOC103704990 ... gene-LOC103709050, gene-LOC103710526, gene-LOC103718102, gene-LOC120108369
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.1272.V1.1, AsparagusV1_06.1886.V1.1
Asteraceae	Flaveria trinervia	4	Ftri11G28598, Ftri15G08350, Ftri5G07547, Ftri5G33564
Brassicaceae	Arabidopsis thaliana	3	AT1G30200.2, AT4G18380.1, AT5G46170.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10000919m.g.v1.0, Thhalv10007915m.g.v1.0 ... Thhalv10025383m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g26020.v2.2, Sp2g11030.v2.2, Sp7g15660.v2.2
Brassicaceae	Brassica nigra	3	BniB04g011150.2N, BniB04g045540.2N, BniB05g018060.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq04G0211
Casuarinaceae	Casuarina glauca	1	Cgl04G0299
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno01g09140, gene.Cymno02g17820, gene.Cymno02g17840 ... gene.Cymno03g02750
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g22400, gene.Thate05g03810, gene.Thate07g01890
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-3808, nbisL1-mrna-4674, nbisL1-mrna-7531
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG12.69
Plantaginaceae	Plantago ovata	2	Pov_00013120, Pov_00038501
Plumbaginaceae	Limonium bicolor	1	Lb4G25554
Poaceae	Echinochloa crus-galli	13	AH01.3814, AH02.3408, AH05.1792, AH05.1964, BH01.4154 ... BH02.3320, BH05.1958, BH05.2088, CH01.4432, CH02.3087, CH02.3915, CH05.2027, CH05.2161
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_1AG0034810, gene-QOZ80_1AG0037310 ... gene-QOZ80_1BG0084860, gene-QOZ80_1BG0087430, gene-QOZ80_3AG0246400, gene-QOZ80_3BG0281800, gene-QOZ80_5AG0367460, gene-QOZ80_5AG0368790, gene-QOZ80_5BG0414860, gene-QOZ80_5BG0416340
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0069870.1.CDS1 ... HORVU.MOREX.r3.1HG0078420.1.CDS1, HORVU.MOREX.r3.3HG0292080.1.CDS1, HORVU.MOREX.r3.3HG0296140.1.CDS1, HORVU.MOREX.r3.4HG0380410.1.CDS1
Poaceae	Lolium multiflorum	6	gene-QYE76_013970, gene-QYE76_014834, gene-QYE76_055851 ... gene-QYE76_055852, gene-QYE76_056229, gene-QYE76_068298
Poaceae	Oryza coarctata	10	Oco01G021360, Oco01G022930, Oco02G022190, Oco02G023650 ... Oco05G012160, Oco06G014250, Oco09G012780, Oco09G013850, Oco10G012860, Oco10G013920
Poaceae	Oryza sativa	5	LOC_Os01g56390.1, LOC_Os01g59690.1, LOC_Os03g20500.1 ... LOC_Os05g41130.1, LOC_Os05g43490.2
Poaceae	Paspalum vaginatum	6	gene-BS78_01G301400, gene-BS78_01G370700 ... gene-BS78_03G289800, gene-BS78_03G312700, gene-BS78_09G185500, gene-BS78_09G197800
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0405679, Pt_Chr0605567, Pt_Chr0605580
Poaceae	Sporobolus alterniflorus	20	Chr01G017240, Chr01G018090, Chr01G033440, Chr02G006690 ... Chr02G008450, Chr02G012760, Chr03G017150, Chr03G018460, Chr04G010050, Chr05G025030, Chr05G026690, Chr07G001750, Chr08G017130, Chr08G023420, Chr12G006160, Chr12G019480, Chr18G012620, Chr18G013540, Chr22G004100, Chr22G005130
Poaceae	Thinopyrum elongatum	5	Tel1E01G496600, Tel1E01G536300, Tel3E01G498200 ... Tel3E01G538800, Tel4E01G319600
Poaceae	Triticum dicoccoides	10	gene_TRIDC1AG045730, gene_TRIDC1AG048900 ... gene_TRIDC1BG051770, gene_TRIDC1BG055580, gene_TRIDC3AG045130, gene_TRIDC3AG048530, gene_TRIDC3BG051110, gene_TRIDC3BG054540, gene_TRIDC4AG017680, gene_TRIDC4BG034680
Poaceae	Triticum aestivum	16	TraesCS1A02G307800.1.cds1, TraesCS1A02G329300.1.cds1 ... TraesCS1B02G318500.1.cds1, TraesCS1B02G342700.1, TraesCS1D02G307200.1.cds1, TraesCS1D02G331400.1.cds1, TraesCS3A02G296700.1.cds1, TraesCS3A02G336900.1.cds1, TraesCS3B02G340400.1.cds1, TraesCS3B02G368000.1.cds1, TraesCS3D02G306000.1.cds1, TraesCS3D02G329900.1.cds1, TraesCS3D02G518800.1, TraesCS4A02G127600.1.cds1, TraesCS4B02G177100.1.cds1, TraesCS4D02G178800.1.cds1
Poaceae	Zea mays	9	Zm00001eb106070_P001, Zm00001eb139210_P001 ... Zm00001eb149190_P001, Zm00001eb150090_P001, Zm00001eb152000_P001, Zm00001eb291260_P001, Zm00001eb292460_P001, Zm00001eb352260_P001, Zm00001eb352820_P001
Poaceae	Zoysia japonica	8	nbis-gene-11796, nbis-gene-14295, nbis-gene-14388 ... nbis-gene-1771, nbis-gene-25326, nbis-gene-31191, nbis-gene-31394, nbis-gene-3457
Poaceae	Zoysia macrostachya	9	Zma_g11235, Zma_g11383, Zma_g1320, Zma_g26895, Zma_g26965 ... Zma_g28478, Zma_g28561, Zma_g3734, Zma_g8749
Portulacaceae	Portulaca oleracea	6	evm.TU.LG10.181, evm.TU.LG17.177, evm.TU.LG18.1079 ... evm.TU.LG18.1082, evm.TU.LG20.791, evm.TU.LG20.793
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g28800, gene.Posoc02g06490, gene.Posoc03g16700
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_14_RagTag.913, evm.TU.Scaffold_16_RagTag.829
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-24992, nbisL1-mrna-840
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-12979, nbisL1-mrna-3884
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-17228, nbisL1-mrna-19201
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000025l.42, evm.TU.utg000022l.78
Rhizophoraceae	Kandelia obovata	3	Maker00012271, Maker00016107, Maker00016159
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-16812, nbisL1-mrna-20194
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-10313, nbisL1-mrna-9130
Salicaceae	Populus euphratica	2	populus_peu09857, populus_peu22152
Solanaceae	Lycium barbarum	2	gene-LOC132609180, gene-LOC132621858
Solanaceae	Solanum chilense	2	SOLCI006023400, SOLCI007434200
Solanaceae	Solanum pennellii	2	gene-LOC107011125, gene-LOC107028832
Tamaricaceae	Reaumuria soongarica	2	STRG.10823_chr07_-, STRG.18321_chr09_-
Tamaricaceae	Tamarix chinensis	2	TC06G1052, TC07G1906
Zosteraceae	Zostera marina	4	Zosma01g32910.v3.1, Zosma01g42750.v3.1, Zosma01g42760.v3.1 ... Zosma05g29710.v3.1