Basic Information
Locus ID:
nbisL1-mrna-8389
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Guanine nucleotide-binding protein subunit beta-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001135F_pilon | 499031 | 500751 | + | nbisL1-mrna-8389 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 39,773.74 Da | 25.34 | 93.68 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 8 | 354 | 8.26458E-82 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 100 | 134 | 2.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 10 | 44 | 0.062 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 331 | 354 | 6.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 56 | 92 | 4.3E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 147 | 180 | 5.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 187 | 222 | 3.8E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 238 | 262 | 8.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 8 | 356 | 7.33E-73 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 5 | 359 | 2.7E-134 | IPR015943 |
| SMART | SM00320 | WD40_4 | 5 | 45 | 7.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 315 | 355 | 0.031 | IPR001680 |
| SMART | SM00320 | WD40_4 | 183 | 222 | 7.8E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 136 | 180 | 5.4E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 53 | 92 | 1.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 225 | 262 | 0.034 | IPR001680 |
| SMART | SM00320 | WD40_4 | 95 | 134 | 4.4E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 12 | 54 | 10.34136 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 102 | 134 | 14.752563 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 146 | 189 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 190 | 231 | 16.189545 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 146 | 183 | 10.337415 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 60 | 93 | 11.602863 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 331 | 359 | 9.97376 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 12 | 46 | 8.518333 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 102 | 134 | 12.182859 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 190 | 227 | 12.209223 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 323 | 359 | 9.282875 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 60 | 101 | 14.41838 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 79 | 93 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 209 | 223 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 167 | 181 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 209 | 223 | 2.0E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 167 | 181 | 2.0E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 121 | 135 | 2.0E-8 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48630.1 | receptor for activated C kinase 1B. Encodes a protein with similarity to mammalian RACKs. RACKs function to shuttle activated protein kinase C to different subcellular sites and may also function as a scaffold through physical interactions with other proteins. RACK1B has no phenotype on its own and probably acts redundantly with RACK1A and RACK1C. | 0 |
| RefSeq | XP_012072542.1 | guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas] | 0 |
| O24076 | Small ribosomal subunit protein RACK1 OS=Medicago sativa OX=3879 GN=GB1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2KZH8 | WD_REPEATS_REGION domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg13319, jg13320, jg27000 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_19983, gene_23890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah002270 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g111970 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg32204, Sbi_jg57196 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24934 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022192 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl53978, Sgl59303 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004264, gene:ENSEOMG00000021259 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0014830, CQ.Regalona.r1.5BG0015800 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30150310 |
| Apiaceae | Apium graveolens | 2 | Ag11G03770, Ag5G00067 |
| Arecaceae | Cocos nucifera | 5 | COCNU_02G005670, COCNU_02G005690, COCNU_06G008140 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103716866, gene-LOC103719002, gene-LOC103722987 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.3204.V1.1, AsparagusV1_05.750.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G23993, Ftri6G09016 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G18080.1, AT1G48630.1, AT3G18130.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10008183m.g.v1.0, Thhalv10011646m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g16100.v2.2, Sp1g35600.v2.2, Sp3g16240.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB01g046490.2N, BniB03g007440.2N, BniB03g027900.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2865 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G3013 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g02150 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0241s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g00270 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.268 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00018619, Pov_00033244, Pov_00033291 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb3G16516, Lb3G16524, Lb5G29571, Lb6G29907 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.2797, AH05.1476, BH02.2881, BH05.1645, CH02.3653 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0029020, gene-QOZ80_1BG0079240 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0084340.1, HORVU.MOREX.r3.3HG0280990.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_015641, gene-QYE76_054631 |
| Poaceae | Oryza coarctata | 4 | Oco01G017580, Oco02G017820, Oco09G016160, Oco10G015950 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g49290.1, LOC_Os05g47890.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G234800, gene-BS78_09G227600 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0503641, Pt_Chr0602392, Pt_Chr0602403 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G015230, Chr02G012360, Chr03G013770, Chr05G021280 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G615800, Tel3E01G441700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG055510, gene_TRIDC1BG063850 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G378000.1, TraesCS1B02G398800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb294990_P001, Zm00001eb342960_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-12605, nbis-gene-13743, nbis-gene-24932 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g10901, Zma_g10902, Zma_g27334, Zma_g28749, Zma_g8453 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.2251, evm.TU.LG05.754, evm.TU.LG14.1424 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g19330, gene.Posoc04g03680 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60404.5, evm.TU.Scaffold_11_RagTag.642 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14300, nbisL1-mrna-28642 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3231, nbisL1-mrna-4299 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12332, nbisL1-mrna-1651 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000061l.4 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000606, Maker00008692 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14440, nbisL1-mrna-948 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19212, nbisL1-mrna-8389 |
| Salicaceae | Populus euphratica | 2 | populus_peu28285, populus_peu29736 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132599878, gene-LOC132633235 |
| Solanaceae | Solanum chilense | 2 | SOLCI000423000, SOLCI006758900 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107007696, gene-LOC107014559, gene-LOC107023263 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12652 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G1040, TC09G1699 |
| Zosteraceae | Zostera marina | 2 | Zosma04g05450.v3.1, Zosma05g32250.v3.1 |