Basic Information
Locus ID:
nbisL1-mrna-838
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
strubbelig-receptor family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 6858444 | 6864361 | - | nbisL1-mrna-838 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 71,727.32 Da | 46.78 | 86.34 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 3 | 32 | 3.4E-5 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 353 | 624 | 2.4E-41 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 105 | 162 | 2.2E-6 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 18 | 171 | 3.78E-34 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 334 | 624 | 1.33E-69 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 430 | 652 | 1.0E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 313 | 428 | 1.8E-25 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 190 | 5.1E-40 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 82 | 102 | 310.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 351 | 625 | 7.0E-23 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 57 | 81 | 7.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 103 | 126 | 24.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 351 | 627 | 34.237507 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 357 | 380 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 60 | 73 | 8.1E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 103 | 116 | 8.1E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 635 | 656 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_039049645.1 | protein STRUBBELIG-RECEPTOR FAMILY 6-like [Hibiscus syriacus] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6X4X0 | Protein STRUBBELIG-RECEPTOR FAMILY 6-like isoform X1 OS=Gossypium australe OX=47621 GN=EPI10_032866 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology