Basic Information
Locus ID:
nbisL1-mrna-8378
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 53257803 | 53259267 | + | nbisL1-mrna-8378 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 47,878.82 Da | 69.17 | 63.60 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 268 | 310 | 3.53777E-24 | - |
| Pfam | PF13639 | Ring finger domain | 268 | 310 | 3.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 249 | 316 | 1.06E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 232 | 316 | 1.4E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 269 | 309 | 5.1E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 269 | 310 | 12.577796 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 181 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_012454662.2 | E3 ubiquitin-protein ligase RZF1 isoform X2 [Gossypium raimondii] | 0 |
| Q94AK4 | E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2YVT9 | RING-type E3 ubiquitin transferase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111200pilonHSYRG00088 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology