Basic Information
Locus ID:
nbisL1-mrna-8375
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
PolyA polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001135F_pilon | 397209 | 405065 | - | nbisL1-mrna-8375 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 97,058.99 Da | 48.12 | 73.33 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 57 | 211 | 2.89126E-29 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 82 | 166 | 1.2E-10 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 17 | 361 | 3.0E-110 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 428 | 495 | 2.1E-5 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 363 | 420 | 6.9E-10 | IPR007010 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 13 | 209 | 6.54E-50 | IPR043519 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 362 | 488 | 4.32E-33 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 212 | 361 | 1.02E-64 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 17 | 359 | 2.2E-159 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 363 | 478 | 3.8E-25 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 49 | 205 | 2.2E-159 | IPR043519 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 633 | 655 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 781 | 828 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 787 | 828 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 523 | 548 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 607 | 665 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 678 | 741 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 607 | 630 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 714 | 740 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 512 | 549 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_024442379.1 | nuclear poly(A) polymerase 1 [Populus trichocarpa] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K1XHU2 | polynucleotide adenylyltransferase OS=Populus trichocarpa OX=3694 GN=POPTR_015G043200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology