Basic Information
Locus ID:
nbisL1-mrna-8358
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
E3 ubiquitin protein ligase DRIP2-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 584411 | 587405 | - | nbisL1-mrna-8358 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.16 | 58,858.21 Da | 47.45 | 84.86 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 19 | 59 | 1.1E-5 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 13 | 81 | 1.35E-9 | - |
| Gene3D | G3DSA:1.20.5.340 | - | 366 | 442 | 3.7E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 114 | 3.7E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 19 | 59 | 2.1E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 19 | 60 | 10.984472 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 35 | 44 | - | IPR017907 |
| Coils | Coil | Coil | 363 | 443 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30580.3 | - | 0 |
| RefSeq | XP_021623178.1 | - | 0 |
| Q94AY3 | E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana OX=3702 GN=DRIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251K7I4 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for nbisL1-mrna-8358.