Basic Information
Locus ID:
nbisL1-mrna-8349
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
arabidillo
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 525857 | 531996 | + | nbisL1-mrna-8349 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 112,177.08 Da | 43.13 | 103.00 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 597 | 628 | 1.7E-8 | IPR000225 |
| Pfam | PF12937 | F-box-like | 40 | 86 | 3.1E-7 | IPR001810 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 764 | 798 | 1.8E-7 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 422 | 456 | 3.3E-5 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 553 | 584 | 1.0E-5 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 500 | 542 | 1.5E-7 | IPR000225 |
| SUPERFAMILY | SSF52047 | RNI-like | 66 | 293 | 3.92E-22 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 361 | 830 | 1.23E-41 | IPR016024 |
| SUPERFAMILY | SSF81383 | F-box domain | 40 | 80 | 9.48E-6 | IPR036047 |
| SUPERFAMILY | SSF48371 | ARM repeat | 749 | 986 | 1.41E-10 | IPR016024 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 33 | 305 | 6.6E-35 | IPR032675 |
| Gene3D | G3DSA:1.25.10.10 | - | 522 | 589 | 2.0E-12 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 590 | 728 | 3.0E-18 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 356 | 521 | 1.4E-22 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 750 | 853 | 1.4E-16 | IPR011989 |
| SMART | SM00185 | arm_5 | 589 | 629 | 5.1E-5 | IPR000225 |
| SMART | SM00185 | arm_5 | 458 | 498 | 4.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 800 | 841 | 3.8 | IPR000225 |
| SMART | SM00185 | arm_5 | 499 | 542 | 2.3E-4 | IPR000225 |
| SMART | SM00185 | arm_5 | 543 | 584 | 0.018 | IPR000225 |
| SMART | SM00185 | arm_5 | 759 | 799 | 0.059 | IPR000225 |
| SMART | SM00256 | fbox_2 | 43 | 83 | 8.2E-5 | IPR001810 |
| SMART | SM00185 | arm_5 | 417 | 457 | 3.6 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 770 | 812 | 13.4224 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 600 | 642 | 15.5924 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 469 | 511 | 10.3074 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 510 | 555 | 11.7774 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 428 | 470 | 9.3624 | IPR000225 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 37 | 83 | 9.285514 | IPR001810 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 554 | 585 | 8.7674 | IPR000225 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44900.1 | ARABIDILLO-1. ARABIDILLO-1 and its homolog, ARABIDILLO -2, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-1 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-1-overexpressing lines produce more lateral roots than wild-type seedlings. | 0 |
| RefSeq | XP_024450261.2 | protein ARABIDILLO 1 isoform X1 [Populus trichocarpa] | 0 |
| O22161 | Protein ARABIDILLO 1 OS=Arabidopsis thaliana OX=3702 GN=FBX5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K1K5 | F-box domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg1772, jg26783, jg26784, jg29182, jg29716, jg29721 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1300 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023302 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29178, Sbi_jg3400 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6549 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000173 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11401, Sgl16777 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014688, gene:ENSEOMG00000035750 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1AG0007280, CQ.Regalona.r1.2BG0010720 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30001820, pistato.v30187980 |
| Apiaceae | Apium graveolens | 3 | Ag1G00135, Ag5G01184, Ag5G01185 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G005060, COCNU_10G003570 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103704656, gene-LOC103713583 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.810.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G24367, Ftri7G10964 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G44900.1, AT3G60350.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001300m.g.v1.0, Thhalv10005776m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 4 | Sp4g26970.v2.2, Sp5g02870.v2.2, Sp5g02880.v2.2 ... |
| Brassicaceae | Brassica nigra | 8 | BniB01g001790.2N, BniB05g044350.2N, BniB06g062610.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1069 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1085 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g02140, gene.Cymno11g09100 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g01670 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2676 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.77 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00017049, Pov_00017050 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37100, Lb5G28093 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.2896, BH01.3234, CH01.3466 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0116820, gene-QOZ80_2BG0170540 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0057680.1, HORVU.MOREX.r3.4HG0416450.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_012700, gene-QYE76_071567, gene-QYE76_071568 ... |
| Poaceae | Oryza coarctata | 2 | Oco19G010330, Oco20G010150 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g41360.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G285000 |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0101058, Pt_Chr0101167, Pt_Chr0503221, Pt_Chr0503266 ... |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G005060, Chr13G019750 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G369100, Tel4E01G609100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG032880, gene_TRIDC1BG038290 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G217900.1, TraesCS1B02G231300.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb023660_P001, Zm00001eb269460_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-36370, nbis-gene-38014, nbis-gene-38015 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12920, Zma_g15691 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.1003 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g01850 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_11_RagTag.1237, evm.TU.Scaffold_4_RagTag.253 ... |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-12427, nbisL1-mrna-12539, nbisL1-mrna-29097 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-10521, nbisL1-mrna-18627, nbisL1-mrna-6877 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12807, nbisL1-mrna-15182, nbisL1-mrna-2042 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000008l.161, evm.TU.utg000010l.278 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001180, Maker00003741 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2438, nbisL1-mrna-9469 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-18860, nbisL1-mrna-22778, nbisL1-mrna-6164 |
| Salicaceae | Populus euphratica | 2 | populus_peu03806, populus_peu31886 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645782 |
| Solanaceae | Solanum chilense | 1 | SOLCI002632500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005143 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3240 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G0052, TC10G2244 |
| Zosteraceae | Zostera marina | 2 | Zosma03g36140.v3.1, Zosma03g36200.v3.1 |