Basic Information
Locus ID:
nbisL1-mrna-8343
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Triphosphate tunel metalloenzyme 3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001135F_pilon | 194555 | 195166 | + | nbisL1-mrna-8343 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 23,105.18 Da | 49.24 | 85.03 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07374 | CYTH-like_Pase | 2 | 178 | 4.24949E-22 | - |
| Pfam | PF01928 | CYTH domain | 2 | 179 | 6.2E-20 | IPR023577 |
| SUPERFAMILY | SSF55154 | CYTH-like phosphatases | 1 | 188 | 1.8E-22 | IPR033469 |
| Gene3D | G3DSA:2.40.320.10 | - | 1 | 202 | 1.2E-59 | - |
| SMART | SM01118 | CYTH_2 | 1 | 203 | 2.6E-5 | IPR023577 |
| ProSiteProfiles | PS51707 | CYTH domain profile. | 1 | 200 | 14.462992 | IPR023577 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G11890.1 | adenylate cyclases. adenylate cyclase | 0 |
| RefSeq | XP_021646399.1 | triphosphate tunel metalloenzyme 3-like [Hevea brasiliensis] | 0 |
| Q9SIY3 | Triphosphate tunnel metalloenzyme 3 OS=Arabidopsis thaliana OX=3702 GN=TTM3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2IUE8 | Uncharacterized protein MANES_04G109100 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg27151, jg3918 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_26223, gene_8598, gene_8939 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014233 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g193350 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11613, Sbi_jg25517, Sbi_jg46547, Sbi_jg9349 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19256, Seu_jg20863 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011063 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41893, Sgl46695 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008794, gene:ENSEOMG00000032172 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0022940, CQ.Regalona.r1.8BG0019400 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30129110, pistato.v30261800 |
| Apiaceae | Apium graveolens | 2 | Ag4G01655, Ag5G00155 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G010350, COCNU_11G008040 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706473, gene-LOC103711469 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.110.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri5G17591, Ftri7G05040 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G11890.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002332m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | SpUN0284_0010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g011180.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0349, Ceq06G1432 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0364, Cgl06G1497 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g07530 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0053s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g21370 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8145 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.764, evm.TU.LG07.615 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001085, Pov_00020198 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G29592, Lb6G32020 |
| Poaceae | Echinochloa crus-galli | 7 | AH04.146, AH07.17, BH02.1220, BH04.146, CH04.62, CH05.143 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0122660, gene-QOZ80_2BG0178010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0651270.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_049950, gene-QYE76_049982, gene-QYE76_049983 |
| Poaceae | Oryza coarctata | 1 | Oco15G005860 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g20400.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G253900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0207366 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G011080, Chr23G017800, Chr26G001860 |
| Poaceae | Thinopyrum elongatum | 26 | Tel1E01G145800, Tel3E01G035300, Tel3E01G466900 ... |
| Poaceae | Triticum dicoccoides | 9 | gene_TRIDC1BG050710, gene_TRIDC3BG004370 ... |
| Poaceae | Triticum aestivum | 12 | TraesCS2D02G367500.1, TraesCS3B02G029200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb225080_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-55316 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23857 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG07.1803, evm.TU.LG16.1596, evm.TU.LG26.72 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g17050 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.93, evm.TU.Scaffold_11_RagTag.675 |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-10710, nbisL1-mrna-12912, nbisL1-mrna-12915 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17187, nbisL1-mrna-21303 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12287, nbisL1-mrna-16534 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000005l.12, evm.TU.utg000033l.61 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009097 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16714, nbisL1-mrna-17121 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-14490, nbisL1-mrna-8343, nbisL1-mrna-8344 |
| Salicaceae | Populus euphratica | 3 | populus_peu04259, populus_peu05682, populus_peu35079 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603101, gene-LOC132621430 |
| Solanaceae | Solanum chilense | 1 | SOLCI004820400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107021242, gene-LOC107026488 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_10161, gene_9012 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2266 |
| Zosteraceae | Zostera marina | 2 | Zosma01g04530.v3.1, Zosma03g33860.v3.1 |