Basic Information
Locus ID:
nbisL1-mrna-833
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 7808303 | 7813629 | - | nbisL1-mrna-833 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.53 | 60,896.43 Da | 39.09 | 75.68 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 334 | 522 | 1.06981E-49 | - |
| CDD | cd10320 | RGL4_N | 4 | 187 | 2.06692E-59 | - |
| CDD | cd10316 | RGL4_M | 223 | 322 | 3.65367E-33 | IPR029413 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 247 | 319 | 1.2E-22 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 332 | 520 | 6.1E-54 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 5 | 91 | 3.7E-36 | IPR010325 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 6 | 184 | 3.01E-9 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 222 | 322 | 8.24E-9 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 329 | 522 | 9.35E-46 | IPR008979 |
| Gene3D | G3DSA:2.70.98.10 | - | 2 | 197 | 1.6E-14 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 220 | 321 | 3.0E-6 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 330 | 522 | 3.6E-19 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_020537187.1 | probable rhamnogalacturonate lyase B isoform X2 [Jatropha curcas] | 0 |
| TrEMBL | A0A836XWR4 | rhamnogalacturonan endolyase OS=Salix suchowensis OX=1278906 GN=IMY05_014G0000600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology