Basic Information
Locus ID:
nbisL1-mrna-8301
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 17261640 | 17272214 | - | nbisL1-mrna-8301 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.07 | 140,246.84 Da | 46.37 | 77.44 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 648 | 780 | 2.39571E-75 | - |
| CDD | cd17920 | DEXHc_RecQ | 444 | 647 | 3.33406E-100 | - |
| Pfam | PF09382 | RQC domain | 871 | 987 | 2.0E-21 | IPR018982 |
| Pfam | PF00570 | HRDC domain | 1029 | 1097 | 6.0E-15 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 664 | 770 | 2.9E-17 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 782 | 863 | 2.9E-15 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 458 | 627 | 2.7E-18 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 646 | 913 | 1.37E-60 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1028 | 1101 | 1.61E-14 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 419 | 789 | 6.69E-43 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 420 | 647 | 8.2E-89 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1021 | 1107 | 1.5E-23 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 648 | 867 | 1.1E-65 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 871 | 981 | 1.1E-20 | IPR036388 |
| SMART | SM00956 | RQC_2 | 873 | 984 | 5.7E-25 | IPR018982 |
| SMART | SM00487 | ultradead3 | 452 | 656 | 4.1E-32 | IPR014001 |
| SMART | SM00490 | helicmild6 | 690 | 771 | 1.8E-27 | IPR001650 |
| SMART | SM00341 | hrdc7 | 1025 | 1107 | 1.4E-6 | IPR002121 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 448 | 924 | 7.9E-162 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1025 | 1107 | 18.5989 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 665 | 817 | 20.168964 | IPR001650 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 680 | 722 | 9.242126 | IPR001763 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 464 | 640 | 21.593769 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 578 | 587 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1108 | 1161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1117 | 1161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 147 | - | - |
| Coils | Coil | Coil | 316 | 343 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_021658967.1 | ATP-dependent DNA helicase Q-like 4A [Hevea brasiliensis] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A251K0S2 | DNA helicase OS=Manihot esculenta OX=3983 GN=MANES_10G122800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology