Basic Information
Locus ID:
nbisL1-mrna-8291
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 52466832 | 52469415 | + | nbisL1-mrna-8291 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 35,537.02 Da | 32.65 | 80.12 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 197 | 214 | 0.27 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 151 | 185 | 0.013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 81 | 296 | 3.3E-24 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 77 | 188 | 2.8E-37 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 189 | 250 | 1.4E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 251 | 321 | 1.4E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 107 | 146 | 27.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 149 | 214 | 1.9E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 197 | 216 | 9.672996 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 201 | 215 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.4 | - | 0 |
| RefSeq | XP_022717130.1 | protein SPA1-RELATED 3-like isoform X4 [Durio zibethinus] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P5WMN0 | protein SPA1-RELATED 3-like isoform X4 OS=Durio zibethinus OX=66656 GN=LOC111275842 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology