Basic Information
Locus ID:
nbisL1-mrna-8267
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
PAPA-1-like family protein zinc finger (HIT type) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 52280298 | 52283670 | - | nbisL1-mrna-8267 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.23 | 59,061.17 Da | 52.77 | 58.99 | -0.95 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 497 | 528 | 1.4E-5 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 405 | 480 | 2.2E-11 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 405 | 481 | 1.7E-19 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 189 | - | - |
| Coils | Coil | Coil | 434 | 454 | - | - |
| Coils | Coil | Coil | 394 | 424 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_012434283.1 | uncharacterized protein LOC105761123 [Gossypium raimondii] | 0 |
| TrEMBL | A0A7J8XJH0 | PAPA-1 domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_014989 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology