Basic Information
Locus ID:
nbisL1-mrna-8262
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002078F_pilon | 4857578 | 4859135 | + | nbisL1-mrna-8262 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 47,504.48 Da | 64.05 | 82.54 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 111 | 154 | 2.09072E-20 | - |
| Pfam | PF13639 | Ring finger domain | 111 | 154 | 1.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 91 | 160 | 5.42E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 86 | 162 | 1.7E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 112 | 153 | 8.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 112 | 154 | 12.69582 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 340 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_022754998.1 | E3 ubiquitin-protein ligase ATL42-like [Durio zibethinus] | 0 |
| Q5XF85 | E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6P5ZQ49 | E3 ubiquitin-protein ligase ATL42-like OS=Durio zibethinus OX=66656 GN=LOC111303182 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology