Basic Information
Locus ID:
nbisL1-mrna-8253
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 52177271 | 52185431 | + | nbisL1-mrna-8253 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 122,244.83 Da | 37.13 | 84.00 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 891 | 924 | 0.0057 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 342 | 1021 | 2.59E-30 | IPR011047 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 950 | 1088 | 5.89E-5 | IPR011044 |
| Gene3D | G3DSA:2.130.10.10 | - | 328 | 512 | 9.6E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 513 | 684 | 2.3E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 685 | 1035 | 2.0E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 842 | 882 | 5.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 581 | 624 | 5.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 341 | 382 | 0.015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 885 | 924 | 2.1E-5 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.7E-13 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 3.4E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 471 | 514 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 980 | 1016 | 410.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 892 | 926 | 10.23196 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 349 | 391 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.195243 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 602 | 633 | 9.539323 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.839112 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 892 | 933 | 12.680634 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1069 | 1110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1088 | 1110 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.2 | TOPLESS-related 3. | 0 |
| RefSeq | XP_039032366.1 | topless-related protein 3-like isoform X1 [Hibiscus syriacus] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2XYG8 | Protein TOPLESS OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111671pilonHSYRG00140 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology