Basic Information
Locus ID:
nbisL1-mrna-8236
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 10922244 | 10924545 | + | nbisL1-mrna-8236 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 37,823.29 Da | 58.85 | 80.12 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 286 | - | - |
| Coils | Coil | Coil | 81 | 101 | - | - |
| Coils | Coil | Coil | 116 | 150 | - | - |
| Coils | Coil | Coil | 223 | 264 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G09060.1 | 0 | |
| RefSeq | XP_002513982.2 | myocardial zonula adherens protein [Ricinus communis] | 0 |
| TrEMBL | B9RJR3 | Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1037550 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10797, jg6138 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1459 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023798 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g008390, BVRB_3g060290 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29386, Sbi_jg3609 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6350 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000810 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11992, Sgl15968 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012732, gene:ENSEOMG00000033614 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0014620 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30041420 |
| Apiaceae | Apium graveolens | 1 | Ag11G03745 |
| Arecaceae | Cocos nucifera | 3 | COCNU_09G005900, COCNU_09G005910, scaffold014438G000030 |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103717588, gene-LOC103723692, gene-LOC113463167 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1066.V1.1, AsparagusV1_09.1396.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G16790 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G14680.1, AT4G09060.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008342m.g.v1.0, Thhalv10028816m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g13060.v2.2, Sp6g08460.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g009620.2N, BniB06g039990.2N, BniB08g035130.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G0120, Ceq03G2201 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2344 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g04760, gene.Cymno10g08730 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g13490, gene.Thate08g16810 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2086 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1544 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037206 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G15400 |
| Poaceae | Echinochloa crus-galli | 4 | AH07.4048, BH07.3863, CH07.3929, Contig1910.3 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0151660, gene-QOZ80_2BG0207030 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0633800.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G026260, Oco04G026680 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g58470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G330100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0105639, Pt_Chr0105665 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr09G026970, Chr13G000170, Chr13G000180 |
| Poaceae | Thinopyrum elongatum | 4 | Tel2E01G787800, Tel4E01G138000, Tel4E01G138100 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC1AG007730, gene_TRIDC2AG072590 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS1D02G008100.1, TraesCS6B02G466400.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb259540_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-38873 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17485 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1835, evm.TU.LG06.529 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g10420, gene.Posoc02g11620, gene.Posoc06g16000 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.962, evm.TU.Scaffold_8_RagTag.778 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18968, nbisL1-mrna-9457 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13317, nbisL1-mrna-18038 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20506, nbisL1-mrna-6793 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.732, evm.TU.utg000018l.499 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003719, Maker00010590 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-3007, nbisL1-mrna-8236 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20287, nbisL1-mrna-9980 |
| Salicaceae | Populus euphratica | 1 | populus_peu32221 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132620184, gene-LOC132627575 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016011 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_15702, gene_8662 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2958, TC09G1096 |
| Zosteraceae | Zostera marina | 2 | Zosma03g28080.v3.1, Zosma05g23210.v3.1 |