Basic Information
Locus ID:
nbisL1-mrna-8227
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the eukaryotic ribosomal protein eS6 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 10994617 | 10997151 | + | nbisL1-mrna-8227 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.73 | 36,208.90 Da | 37.82 | 77.96 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01092 | Ribosomal protein S6e | 75 | 202 | 4.4E-56 | IPR001377 |
| Gene3D | G3DSA:1.20.5.2650 | - | 207 | 308 | 2.0E-38 | - |
| SMART | SM01405 | Ribosomal_S6e_2 | 75 | 202 | 1.6E-82 | IPR001377 |
| ProSitePatterns | PS00578 | Ribosomal protein S6e signature. | 126 | 137 | - | IPR018282 |
| Hamap | MF_00512 | 30S ribosomal protein S6e [rps6e]. | 18 | 191 | 10.341343 | IPR020924 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 323 | - | - |
| Coils | Coil | Coil | 263 | 290 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko01521 (EGFR tyrosine kinase inhibitor resistance)
map01521 (EGFR tyrosine kinase inhibitor resistance)
ko03010 (Ribosome)
map03010 (Ribosome)
ko04066 (HIF-1 signaling pathway)
map04066 (HIF-1 signaling pathway)
ko04150 (mTOR signaling pathway)
map04150 (mTOR signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10360.1 | Ribosomal protein S6e. RPS6A and RPS6B are fully redundant and essential during gametogenesis. | 0 |
| RefSeq | XP_021600954.1 | 40S ribosomal protein S6 [Manihot esculenta] | 0 |
| Q9M3V8 | Small ribosomal subunit protein eS6 OS=Asparagus officinalis OX=4686 GN=rps6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2KEM2 | 40S ribosomal protein S6 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology