Basic Information
Locus ID:
nbisL1-mrna-8224
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000059F_pilon | 1915837 | 1919012 | + | nbisL1-mrna-8224 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 84,314.46 Da | 49.87 | 78.85 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 586 | 662 | 1.48131E-47 | - |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 593 | 638 | 5.5E-11 | IPR011598 |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 156 | 341 | 3.6E-56 | IPR025610 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 592 | 658 | 1.09E-18 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 581 | 667 | 5.6E-18 | IPR036638 |
| SMART | SM00353 | finulus | 595 | 644 | 3.7E-17 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 589 | 638 | 17.688452 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 504 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 600 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 600 | - | - |
| Coils | Coil | Coil | 635 | 669 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32640.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue lightmediated photomorphogenic growth and blue and far-red-lightregulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression. | 0 |
| RefSeq | XP_021661068.1 | transcription factor MYC2-like [Hevea brasiliensis] | 0 |
| A0A3Q7HRZ6 | Transcription factor MYC2 OS=Solanum lycopersicum OX=4081 GN=MYC2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KBK1 | Uncharacterized protein MANES_17G016000 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology