Basic Information
Locus ID:
nbisL1-mrna-8222
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000059F_pilon | 1868896 | 1872742 | - | nbisL1-mrna-8222 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.54 | 66,693.48 Da | 44.25 | 66.87 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 271 | 300 | 1.2E-6 | IPR001394 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 363 | 416 | 9.4E-6 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 269 | 446 | 2.94E-38 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 307 | 449 | 8.0E-29 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 256 | 306 | 1.2E-8 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 478 | 11.821492 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 271 | 286 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17895.1 | ubiquitin-specific protease 20. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021680176.1 | ubiquitin carboxyl-terminal hydrolase 20-like isoform X2 [Hevea brasiliensis] | 0 |
| Q9FPS7 | Ubiquitin carboxyl-terminal hydrolase 20 OS=Arabidopsis thaliana OX=3702 GN=UBP20 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A6M6D0 | Ubiquitin carboxyl-terminal hydrolase OS=Hevea brasiliensis OX=3981 GN=GH714_021322 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37350 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15025 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004280 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g105850 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24507, Sbi_jg8354 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11691 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001691 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51315, Sgl56692 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000005154, gene:ENSEOMG00000025136 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0002360, CQ.Regalona.r1.5BG0002510 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30029480 |
| Arecaceae | Cocos nucifera | 2 | COCNU_09G003670, scaffold013090G000030 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706366, gene-LOC103711769 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.149.V1.1, AsparagusV1_10.374.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G10795, Ftri3G11036 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G17895.1, AT5G46740.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10000790m.g.v1.0, Thhalv10002775m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g11550.v2.2, Sp7g16220.v2.2, SpUn0036_0060.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g063390.2N, BniB04g010840.2N, BniB07g023070.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0345 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0354 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g08550 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g14050 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.774 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002983, Pov_00036012 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G08758, Lb4G23178, Lb4G23179 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3069, BH07.2892, CH07.2974 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0141660, gene-QOZ80_2BG0197240 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0605640.1 |
| Poaceae | Lolium multiflorum | 9 | gene-QYE76_012874, gene-QYE76_012875, gene-QYE76_024471 ... |
| Poaceae | Oryza coarctata | 2 | Oco03G018700, Oco04G019420 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g46650.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G232000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0203823 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G004660, Chr15G006140 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G489400 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG029220, gene_TRIDC1AG029240 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G192900.1, TraesCS1B02G207800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb187750_P001, Zm00001eb251290_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-22194, nbis-gene-38134, nbis-gene-9070 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14176, Zma_g16925 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.716, evm.TU.LG17.724 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g20950 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.526, evm.TU.Scaffold_16_RagTag.483 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17825, nbisL1-mrna-22753 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17726, nbisL1-mrna-4991 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8222 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000007l.67, evm.TU.utg000022l.213 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014377, Maker00018307 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16239, nbisL1-mrna-3348 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10583, nbisL1-mrna-6412 |
| Salicaceae | Populus euphratica | 3 | populus_peu03172, populus_peu03182, populus_peu34037 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609729, gene-LOC132635288 |
| Solanaceae | Solanum chilense | 3 | SOLCI001034300, SOLCI001669200, SOLCI002551200 |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107026714, gene-LOC107028321, gene-LOC114074015 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.9792_chr05_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2854 |
| Zosteraceae | Zostera marina | 1 | Zosma06g20260.v3.1 |