Basic Information
Locus ID:
nbisL1-mrna-8206
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000059F_pilon | 1653738 | 1654982 | - | nbisL1-mrna-8206 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.48 | 45,229.82 Da | 36.55 | 72.78 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 242 | 277 | 8.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 282 | 316 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 108 | 144 | 1.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 105 | 407 | 2.38E-43 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 78 | 173 | 8.2E-9 | IPR015943 |
| Gene3D | G3DSA:4.10.1000.10 | - | 18 | 66 | 4.5E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 177 | 411 | 9.0E-34 | IPR015943 |
| SMART | SM00320 | WD40_4 | 240 | 277 | 1.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 105 | 144 | 1.3E-4 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 71 | 98 | 0.14 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 27 | 52 | 0.0015 | IPR000571 |
| SMART | SM00320 | WD40_4 | 280 | 317 | 0.0031 | IPR001680 |
| SMART | SM00320 | WD40_4 | 323 | 364 | 52.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 192 | 229 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 367 | 404 | 8.1 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 247 | 279 | 9.599237 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 71 | 99 | 9.957705 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 112 | 144 | 10.363778 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 247 | 286 | 12.045688 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 27 | 53 | 12.070252 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 112 | 153 | 13.11507 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 264 | 278 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 264 | 278 | 2.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 304 | 318 | 2.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 131 | 145 | 2.6E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_044467491.1 | zinc finger CCCH domain-containing protein 48-like isoform X1 [Mangifera indica] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5C7GU52 | WD_REPEATS_REGION domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_027293 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology