Basic Information
Locus ID:
nbisL1-mrna-8204
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000059F_pilon | 1611669 | 1613033 | - | nbisL1-mrna-8204 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 49,898.61 Da | 39.99 | 77.93 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 322 | 356 | 0.039 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 148 | 184 | 3.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 282 | 317 | 0.0044 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 145 | 447 | 1.1E-42 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 216 | 451 | 6.9E-33 | IPR015943 |
| Gene3D | G3DSA:4.10.1000.10 | - | 62 | 138 | 5.2E-9 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 144 | 209 | 1.7E-5 | IPR015943 |
| SMART | SM00320 | WD40_4 | 232 | 269 | 11.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 67 | 92 | 0.0015 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 111 | 138 | 0.14 | IPR000571 |
| SMART | SM00320 | WD40_4 | 145 | 184 | 9.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 407 | 444 | 7.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 320 | 357 | 0.0081 | IPR001680 |
| SMART | SM00320 | WD40_4 | 363 | 404 | 52.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 280 | 317 | 9.9E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 287 | 326 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 287 | 319 | 9.282875 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 152 | 193 | 13.081652 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 111 | 139 | 9.957705 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 67 | 93 | 12.070252 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 152 | 184 | 10.337415 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 304 | 318 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 171 | 185 | 5.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 304 | 318 | 5.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 344 | 358 | 5.3E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_044467491.1 | zinc finger CCCH domain-containing protein 48-like isoform X1 [Mangifera indica] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5C7GU52 | WD_REPEATS_REGION domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_027293 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology