Basic Information
Locus ID:
nbisL1-mrna-8202
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 28752166 | 28755518 | + | nbisL1-mrna-8202 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 72,827.23 Da | 45.35 | 78.07 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 204 | 401 | 6.79826E-102 | - |
| CDD | cd18794 | SF2_C_RecQ | 402 | 535 | 1.31066E-64 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 417 | 524 | 3.7E-16 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 616 | 647 | 2.3E-5 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 212 | 381 | 3.3E-17 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 249 | 546 | 1.65E-51 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 402 | 651 | 7.3E-52 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 171 | 401 | 6.7E-85 | IPR027417 |
| SMART | SM00487 | ultradead3 | 206 | 410 | 3.4E-27 | IPR014001 |
| SMART | SM00490 | helicmild6 | 444 | 526 | 1.3E-21 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 204 | 574 | 1.9E-141 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 416 | 569 | 18.381359 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 218 | 394 | 21.373711 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 333 | 342 | - | IPR002464 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_011036936.1 | - | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A837A6J4 | ATP-dependent DNA helicase OS=Salix suchowensis OX=1278906 GN=IMY05_005G0015300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology