Basic Information
Locus ID:
nbisL1-mrna-820
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 6689558 | 6695114 | - | nbisL1-mrna-820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.00 | 51,405.87 Da | 44.24 | 84.97 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 221 | 304 | 2.05681E-30 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 223 | 297 | 1.7E-5 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 127 | 172 | 9.5E-9 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 213 | 312 | 1.61E-15 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 61 | 94 | 2.82E-5 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 104 | 182 | 1.05E-19 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 197 | 309 | 1.2E-18 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 61 | 196 | 3.4E-18 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 61 | 174 | 1.8E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 222 | 300 | 3.7E-11 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 221 | 304 | 13.106108 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 61 | 178 | 13.720102 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 218 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_016688392.2 | oligouridylate-binding protein 1B [Gossypium hirsutum] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A3A5C9 | Oligouridylate-binding protein 1A OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110578pilonHSYRG00019 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology