Basic Information
Locus ID:
nbisL1-mrna-8190
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 28667776 | 28677411 | + | nbisL1-mrna-8190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.86 | 124,767.35 Da | 41.53 | 82.72 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 447 | 484 | 0.0017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 914 | 947 | 0.0011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 772 | 1092 | 3.94E-33 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 348 | 952 | 4.87E-42 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 833 | 1105 | 5.1E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 537 | 680 | 6.6E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 309 | 536 | 7.8E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 443 | 484 | 3.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 393 | 437 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 335 | 376 | 0.083 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.2E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 1057 | 1094 | 99.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 997 | 1039 | 99.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 908 | 947 | 6.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 576 | 617 | 1.8 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 1.0E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 530 | 573 | 350.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 865 | 905 | 0.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 486 | 527 | 0.054 | IPR001680 |
| SMART | SM00320 | WD40_4 | 826 | 862 | 470.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 450 | 493 | 9.171722 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 595 | 626 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.093014 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 915 | 950 | 10.732868 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.385372 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 915 | 956 | 13.415834 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 471 | 485 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1110 | 1133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1094 | 1133 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_021622866.1 | topless-related protein 3 [Manihot esculenta] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9VDF5 | Topless-related protein 3-like OS=Manihot esculenta OX=3983 GN=MANES_09G174100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology