Basic Information
Locus ID:
nbisL1-mrna-8182
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002078F_pilon | 4386988 | 4391882 | + | nbisL1-mrna-8182 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.06 | 46,083.38 Da | 39.64 | 91.59 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 61 | 331 | 8.7E-112 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 333 | 387 | 3.92E-9 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 61 | 331 | 4.02E-51 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 88 | 399 | 2.3E-104 | IPR027417 |
| SMART | SM00382 | AAA_5 | 111 | 247 | 6.2E-5 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 58 | 386 | 7.5E-131 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 89 | 248 | 34.130737 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 265 | 336 | 27.169071 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 277 | 285 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 147 | 176 | 2.3E-72 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 360 | 377 | 2.3E-72 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 181 | 210 | 2.3E-72 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 274 | 302 | 2.3E-72 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 219 | 248 | 2.3E-72 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 307 | 336 | 2.3E-72 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 58 | 392 | 41.216473 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 56 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_021650200.1 | DNA repair protein recA homolog 3, mitochondrial isoform X2 [Hevea brasiliensis] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2JTG1 | DNA repair protein recA homolog 3 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology