Basic Information
Locus ID:
nbisL1-mrna-818
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 7651696 | 7655288 | - | nbisL1-mrna-818 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 40,062.69 Da | 47.56 | 67.31 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 69 | 367 | 5.4E-85 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 256 | 359 | 8.34E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 255 | 370 | 3.3E-43 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 258 | 360 | 25.210154 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 216 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65670.2 | indole-3-acetic acid inducible 9. auxin (indole-3-acetic acid) induced gene | 0 |
| RefSeq | XP_012079519.1 | auxin-responsive protein IAA9 [Jatropha curcas] | 0 |
| Q38827 | Auxin-responsive protein IAA9 OS=Arabidopsis thaliana OX=3702 GN=IAA9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067K7E1 | Auxin-responsive protein OS=Jatropha curcas OX=180498 GN=JCGZ_12617 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology