Basic Information
Locus ID:
nbisL1-mrna-8158
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 51282194 | 51285489 | + | nbisL1-mrna-8158 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 58,222.09 Da | 40.82 | 110.25 | 0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00083 | Sugar (and other) transporter | 58 | 268 | 4.1E-31 | IPR005828 |
| Pfam | PF07690 | Major Facilitator Superfamily | 375 | 504 | 1.9E-11 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 11 | 513 | 4.58E-59 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 19 | 515 | 3.2E-79 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 26 | 508 | 33.347439 | IPR020846 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_038995271.1 | LOW QUALITY PROTEIN: organic cation/carnitine transporter 7-like [Hibiscus syriacus] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U8M765 | organic cation/carnitine transporter 7-like OS=Gossypium hirsutum OX=3635 GN=LOC107934642 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology