Basic Information
Locus ID:
nbisL1-mrna-8158
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
disease resistance
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 28458888 | 28465657 | - | nbisL1-mrna-8158 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 184,728.22 Da | 44.17 | 102.12 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 162 | 391 | 6.9E-43 | IPR002182 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 149 | 405 | 1.68E-44 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 761 | 1068 | 3.37E-7 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 1191 | 1582 | 5.02E-17 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 465 | 1233 | 8.73E-31 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 145 | 307 | 4.6E-28 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 450 | 654 | 1.5E-23 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1181 | 1328 | 2.0E-6 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1480 | 1606 | 2.1E-8 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 875 | 1081 | 2.6E-12 | IPR032675 |
| Gene3D | G3DSA:1.10.8.430 | - | 308 | 394 | 1.2E-17 | IPR042197 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1084 | 1180 | 1.1E-7 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 658 | 869 | 7.0E-10 | IPR032675 |
| PRINTS | PR00364 | Disease resistance protein signature | 341 | 355 | 4.6E-20 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 612 | 628 | 4.6E-20 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 176 | 191 | 4.6E-20 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 249 | 263 | 4.6E-20 | - |
| Coils | Coil | Coil | 74 | 94 | - | - |
| Coils | Coil | Coil | 28 | 55 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27190.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_052302598.1 | - | 0 |
| Q9T048 | Disease resistance protein At4g27190 OS=Arabidopsis thaliana OX=3702 GN=At4g27190 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2MMH8 | Putative disease resistance protein At4g27220 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology