Basic Information
Locus ID:
nbisL1-mrna-8146
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Short Name:
TPL
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 51149953 | 51157406 | - | nbisL1-mrna-8146 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 128,456.77 Da | 40.09 | 78.65 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 466 | 504 | 2.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 939 | 972 | 0.002 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 353 | 547 | 1.46E-21 | IPR036322 |
| SUPERFAMILY | SSF75011 | 3-carboxy-cis,cis-mucoante lactonizing enzyme | 940 | 1139 | 1.27E-13 | - |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 496 | 977 | 1.02E-44 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 560 | 706 | 5.9E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 828 | 1104 | 6.4E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 330 | 559 | 4.3E-28 | IPR015943 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.2E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 1024 | 1065 | 2.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 507 | 548 | 0.069 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 850 | 887 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 463 | 504 | 1.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 551 | 594 | 30.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 640 | 681 | 78.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 417 | 457 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 933 | 972 | 6.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 890 | 930 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 597 | 637 | 5.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 615 | 646 | 8.536777 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 470 | 513 | 11.143396 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 940 | 972 | 9.99469 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 14.141059 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 940 | 981 | 12.112524 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 491 | 505 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1150 | 1170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1134 | 1170 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_039060136.1 | topless-related protein 1 [Hibiscus syriacus] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8J5YVN3 | TOPLESS OS=Gossypium anomalum OX=47600 GN=CXB51_015536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology