Basic Information
Locus ID:
nbisL1-mrna-8143
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 28326721 | 28330637 | + | nbisL1-mrna-8143 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 33,742.00 Da | 27.63 | 83.76 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 194 | 225 | 7.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 48 | 283 | 1.02E-17 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 14 | 284 | 1.5E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 141 | 181 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 184 | 225 | 0.0089 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_012089025.1 | autophagy-related protein 18a [Jatropha curcas] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A067JU14 | Autophagy-related protein 18a-like OS=Jatropha curcas OX=180498 GN=JCGZ_23323 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology