Basic Information
Locus ID:
nbisL1-mrna-8138
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000110F_pilon | 5502084 | 5506228 | + | nbisL1-mrna-8138 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 44,995.39 Da | 45.63 | 72.42 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 139 | 213 | 1.35377E-50 | - |
| CDD | cd12354 | RRM3_TIA1_like | 259 | 334 | 4.27954E-33 | - |
| CDD | cd12352 | RRM1_TIA1_like | 55 | 125 | 3.1266E-33 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 261 | 314 | 2.0E-9 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 140 | 210 | 7.6E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 55 | 121 | 1.0E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 133 | 220 | 7.66E-26 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 39 | 131 | 9.4E-23 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 251 | 342 | 3.53E-18 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 3 | 134 | 5.5E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 236 | 339 | 1.3E-20 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 135 | 232 | 3.1E-25 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 139 | 212 | 2.6E-22 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 260 | 330 | 1.3E-13 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 54 | 123 | 1.6E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 53 | 127 | 15.425642 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 259 | 334 | 13.430161 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 138 | 216 | 16.892406 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 256 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_027125672.1 | oligouridylate-binding protein 1B-like [Coffea arabica] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MF46 | Uncharacterized protein MANES_11G016600 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology