Basic Information
Locus ID:
nbisL1-mrna-8137
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 28259093 | 28262406 | + | nbisL1-mrna-8137 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 44,469.14 Da | 40.32 | 80.55 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 262 | 298 | 7.1E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 42 | 305 | 7.18E-27 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 101 | 377 | 5.0E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 257 | 298 | 0.0013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 214 | 254 | 0.031 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 39 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_012089025.1 | autophagy-related protein 18a [Jatropha curcas] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A067JU14 | Autophagy-related protein 18a-like OS=Jatropha curcas OX=180498 GN=JCGZ_23323 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology