Basic Information
Locus ID:
nbisL1-mrna-8116
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Cysteine Histidine-rich C1 domain family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 50874943 | 50877309 | + | nbisL1-mrna-8116 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.17 | 82,207.42 Da | 47.06 | 65.53 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 140 | 188 | 3.3E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 401 | 453 | 5.3E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 198 | 242 | 1.9E-8 | IPR004146 |
| Pfam | PF03107 | C1 domain | 253 | 294 | 1.5E-7 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 224 | 308 | 1.11E-16 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 38 | 126 | 6.28E-10 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 172 | 244 | 2.12E-14 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 538 | 621 | 6.8E-14 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 396 | 464 | 1.0E-8 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59920.1 | Cysteine/Histidine-rich C1 domain family protein. Isolated in a screen for UV-B insensitive mutants using a hypocotyl growth inhibition assay. Mutants are defective in a number of UV-B responses. | 0 |
| RefSeq | XP_039060936.1 | uncharacterized protein LOC120205062 [Hibiscus syriacus] | 0 |
| Q6NQN8 | Protein VACUOLELESS GAMETOPHYTES OS=Arabidopsis thaliana OX=3702 GN=VLG PE=1 SV=1 | 0 | |
| TrEMBL | A0A5D2UQX7 | Phorbol-ester/DAG-type domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D06G214900v1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg35663, jg8188, jg8412, jg8450, jg8451, jg8457 |
| Apiaceae | Apium graveolens | 5 | Ag10G00884, Ag1G00153, Ag1G00315, Ag8G00374, Ag8G01874 |
| Asteraceae | Flaveria trinervia | 12 | Ftri10G04197, Ftri15G15158, Ftri15G19898, Ftri1G06516 ... |
| Brassicaceae | Arabidopsis thaliana | 35 | AT1G58037.1, AT2G04680.1, AT2G19650.1, AT2G19660.1 ... |
| Brassicaceae | Eutrema salsugineum | 34 | Thhalv10001923m.g.v1.0, Thhalv10002199m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp2g06340.v2.2, Sp5g15690.v2.2, Sp7g01400.v2.2 ... |
| Brassicaceae | Brassica nigra | 39 | BniB01g002950.2N, BniB01g004980.2N, BniB01g026110.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 17 | Ceq01G2298, Ceq02G1953, Ceq03G0083, Ceq03G0113, Ceq03G0190 ... |
| Casuarinaceae | Casuarina glauca | 23 | Cgl01G2601, Cgl01G2602, Cgl01G2604, Cgl03G0217, Cgl03G0218 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 6 | nbisL1-mrna-3679, nbisL1-mrna-5622, nbisL1-mrna-8116 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17998 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17876 |
| Salicaceae | Populus euphratica | 4 | populus_peu26078, populus_peu26197, populus_peu26198 ... |