Basic Information
Locus ID:
nbisL1-mrna-8112
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Oligouridylate-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002078F_pilon | 4008568 | 4013707 | - | nbisL1-mrna-8112 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 46,373.39 Da | 43.60 | 70.26 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 45 | 115 | 8.62787E-34 | - |
| CDD | cd12354 | RRM3_TIA1_like | 257 | 340 | 4.07941E-30 | - |
| CDD | cd12619 | RRM2_PUB1 | 129 | 203 | 1.40892E-49 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 291 | 334 | 2.4E-5 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 130 | 200 | 1.9E-18 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 45 | 111 | 9.3E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 31 | 121 | 1.61E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 248 | 341 | 3.94E-17 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 121 | 210 | 9.13E-28 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 234 | 343 | 3.4E-20 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 123 | 223 | 1.6E-27 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 37 | 122 | 1.1E-18 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 129 | 202 | 6.4E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 44 | 113 | 1.9E-14 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 258 | 336 | 1.0E-9 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 44 | 113 | 22.0 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 129 | 202 | 8.9E-4 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 128 | 206 | 17.898676 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 257 | 340 | 13.634825 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 43 | 117 | 14.385262 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 253 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_030530541.1 | oligouridylate-binding protein 1-like [Rhodamnia argentea] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2M1J5 | Uncharacterized protein MANES_16G093200 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology