Basic Information
Locus ID:
nbisL1-mrna-8071
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000110F_pilon | 4951940 | 4956324 | - | nbisL1-mrna-8071 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 92,040.55 Da | 49.28 | 81.06 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 22 | 164 | 2.02677E-44 | - |
| Pfam | PF00582 | Universal stress protein family | 25 | 158 | 1.1E-6 | IPR006016 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 463 | 718 | 2.0E-40 | IPR001245 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 25 | 160 | 1.51E-9 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 443 | 718 | 1.64E-68 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 420 | 534 | 4.1E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 535 | 738 | 4.0E-49 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 24 | 161 | 8.4E-9 | IPR014729 |
| SMART | SM00220 | serkin_6 | 462 | 725 | 4.1E-28 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 462 | 725 | 35.325825 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 580 | 592 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 327 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 332 | - | - |
| Coils | Coil | Coil | 424 | 444 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12000.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_038707559.1 | U-box domain-containing protein 52-like isoform X1 [Tripterygium wilfordii] | 0 |
| Q8S8S7 | U-box domain-containing protein 34 OS=Arabidopsis thaliana OX=3702 GN=PUB34 PE=3 SV=1 | 0 | |
| TrEMBL | A0A7J7DGV2 | U-box domain-containing protein 52-like OS=Tripterygium wilfordii OX=458696 GN=HS088_TW07G01124 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology