Basic Information
Locus ID:
nbisL1-mrna-8049
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 12622410 | 12623569 | - | nbisL1-mrna-8049 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 11,051.26 Da | 45.27 | 71.73 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 18 | 91 | 2.34483E-48 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 20 | 90 | 9.5E-25 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 7 | 95 | 1.69E-27 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 2 | 95 | 3.6E-40 | - |
| SMART | SM00213 | ubq_7 | 20 | 91 | 1.1E-14 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 18 | 95 | 16.102118 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 0 |
| RefSeq | XP_015899516.2 | small ubiquitin-related modifier 1-like [Ziziphus jujuba var. spinosa] | 0 |
| P55852 | Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0MP85 | Small ubiquitin-related modifier OS=Rhamnella rubrinervis OX=2594499 GN=FNV43_RR03837 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology