Basic Information
Locus ID:
nbisL1-mrna-8030
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
phosphatase 2A 55 kDa regulatory subunit B
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000110F_pilon | 4661989 | 4670420 | - | nbisL1-mrna-8030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 39,389.70 Da | 53.19 | 78.25 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 71 | 107 | 0.1 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 70 | 352 | 3.87E-26 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 57 | 358 | 1.6E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 68 | 107 | 0.099 | IPR001680 |
| SMART | SM00320 | WD40_4 | 219 | 273 | 77.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 118 | 158 | 7.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 177 | 215 | 130.0 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 20 | 359 | 8.4E-138 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 246 | 272 | 3.0E-116 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 107 | 134 | 3.0E-116 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 135 | 163 | 3.0E-116 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 328 | 357 | 3.0E-116 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 192 | 219 | 3.0E-116 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 220 | 245 | 3.0E-116 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 164 | 191 | 3.0E-116 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 79 | 106 | 3.0E-116 | IPR000009 |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17720.1 | Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B | 0 |
| RefSeq | XP_020533933.1 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X3 [Jatropha curcas] | 0 |
| Q39247 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana OX=3702 GN=PP2AB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MMZ2 | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology