Basic Information
Locus ID:
nbisL1-mrna-8023
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
nucleic acid binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 50148647 | 50151689 | - | nbisL1-mrna-8023 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 28,878.99 Da | 40.64 | 71.30 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 66 | 1.8E-8 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 6 | 78 | 2.17E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 3 | 74 | 2.7E-11 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 74 | 5.7E-9 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 78 | 12.185116 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 257 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_016710645.1 | binding partner of ACD11 1 [Gossypium hirsutum] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8L7R5 | binding partner of ACD11 1-like OS=Gossypium hirsutum OX=3635 GN=LOC107924626 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology