Basic Information
Locus ID:
nbisL1-mrna-8014
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 12878308 | 12883973 | - | nbisL1-mrna-8014 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 166,918.19 Da | 35.18 | 103.11 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 317 | 604 | 7.55582E-104 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 941 | 1234 | 2.619E-94 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1257 | 1477 | 7.93951E-125 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 630 | 830 | 2.76789E-112 | - |
| Pfam | PF00005 | ABC transporter | 1277 | 1424 | 1.7E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 317 | 580 | 4.5E-23 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 943 | 1184 | 1.1E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 648 | 782 | 2.4E-20 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 940 | 1240 | 4.71E-53 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 627 | 852 | 9.87E-57 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 307 | 609 | 6.02E-31 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1249 | 1489 | 4.83E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 611 | 865 | 1.3E-75 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 285 | 610 | 3.0E-44 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 906 | 1240 | 1.4E-61 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1242 | 1495 | 1.8E-79 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1285 | 1470 | 1.5E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 657 | 830 | 3.0E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 630 | 853 | 22.502443 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 943 | 1222 | 36.554417 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1259 | 1493 | 18.540878 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 316 | 596 | 32.787743 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 755 | 769 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 893 | 917 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021606750.2 | ABC transporter C family member 3 isoform X1 [Manihot esculenta] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2NFS0 | ABC-type xenobiotic transporter OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology