Basic Information
Locus ID:
nbisL1-mrna-7988
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
lysM domain receptor-like kinase 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 49760851 | 49762872 | - | nbisL1-mrna-7988 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 73,557.41 Da | 43.58 | 85.68 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 202 | 239 | 0.00161177 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 402 | 644 | 8.8E-40 | IPR000719 |
| Pfam | PF01476 | LysM domain | 203 | 246 | 1.5E-4 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 353 | 644 | 1.13E-64 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 346 | 442 | 1.6E-15 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 201 | 252 | 5.6E-6 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 444 | 664 | 2.3E-54 | - |
| SMART | SM00257 | LysM_2 | 135 | 182 | 2.2 | IPR018392 |
| SMART | SM00257 | LysM_2 | 202 | 246 | 0.0011 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 294 | 651 | 33.530807 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 201 | 245 | 10.071218 | IPR018392 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 339 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_012492359.1 | protein LYK5 [Gossypium raimondii] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J9LNX2 | Protein LYK5-like OS=Gossypium schwendimanii OX=34291 GN=Goshw_017688 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology