Basic Information
Locus ID:
nbisL1-mrna-7981
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
disease resistance
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 26546957 | 26551800 | - | nbisL1-mrna-7981 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 107,229.83 Da | 42.54 | 102.13 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 173 | 398 | 3.1E-41 | IPR002182 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 154 | 410 | 8.67E-43 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 472 | 872 | 1.81E-27 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 504 | 913 | 2.6E-34 | IPR032675 |
| Gene3D | G3DSA:3.40.50.300 | - | 149 | 310 | 6.4E-28 | IPR027417 |
| Gene3D | G3DSA:1.10.8.430 | - | 312 | 400 | 6.1E-15 | IPR042197 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 463 | 475 | - | IPR018247 |
| PRINTS | PR00364 | Disease resistance protein signature | 253 | 267 | 6.0E-19 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 180 | 195 | 6.0E-19 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 345 | 359 | 6.0E-19 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 620 | 636 | 6.0E-19 | - |
| Coils | Coil | Coil | 36 | 98 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27190.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_025013768.2 | uncharacterized protein LOC8266842 isoform X3 [Ricinus communis] | 0 |
| Q9T048 | Disease resistance protein At4g27190 OS=Arabidopsis thaliana OX=3702 GN=At4g27190 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2MMH8 | Putative disease resistance protein At4g27220 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology