Basic Information
Locus ID:
nbisL1-mrna-7974
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Ubiquitin fusion degradation protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 49572942 | 49575898 | - | nbisL1-mrna-7974 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.71 | 57,506.14 Da | 49.39 | 59.45 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 99 | 271 | 1.8E-58 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 196 | 269 | 6.8E-30 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 89 | 195 | 6.5E-28 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G29070.2 | Ubiquitin fusion degradation UFD1 family protein. | 0 |
| RefSeq | XP_039048881.1 | ubiquitin fusion degradation protein 1 homolog [Hibiscus syriacus] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A1U8M8M6 | ubiquitin fusion degradation protein 1 homolog OS=Gossypium hirsutum OX=3635 GN=LOC107935128 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology